I've heard from George and Arnie that there is not more power to be made over a stock ECU. I can't imagine that I would ever know more about it than them.
It isn't even legal by the letter. This bit about removing the stock ecu and the system no longer functioning appears nowhere in the GCR. It's one of those things that I keep hearing, but it is not any kind of rule. If you wanted to go by the exact letter of the rule, then none of the piggyback systems would even be legal. But, rules certainly have intent and trying to parse the GCR like a lawyer is a fool's errand.
By the letter of the rule IMO it IS certainly legal. However, my common sense meter tells me that it may have been outside the intent of the rules writer. It may have started life as a Stand alone ECU, however if you remove the stock ecu and the motor won't function it clearly is no longer a stand alone ECU.
I'm thinking perhaps a SPEC low cost aftermarket ECU might be a viable alternative worth pursuing.